PINN

Images from Pinnacles Soil Profile Analysis

Submitted by dylan on Wed, 2006-11-01 16:14.

Misc. scanned images from work at the Pinnacles National Monument, in collaboration with the NRCS and NPS.

Finding pockets of soil between the Pinnacles

Submitted by dylan on Wed, 2006-04-26 06:38.

Online Interface to PINN Soils data

Submitted by dylan on Mon, 2006-04-10 21:38.
 
These examples work best in either the Mozilla or Firefox web browsers. Download Firefox.

PINN Online Access to Soil Data 1
DHTML interface
PINN Online Access to Soil Data 3
DHTML interface: query result
PINN Online Access to Soil Data 2
Ka-Map interface
McCabe Canyon and Temblor Formation
Initial stages of block diagram 1
povray slope class cutaway image
Slope class cutaway
Sierran Transect Figure
Example transect
Initial access to Pinnacles soil survey products and educational materials through two different interactive webpages. The standard interface is functionally very similar to our lab's online soil survey. Currently, the standard interface provides simple querying of the existing SSURGO products and pedon data that has been collected in the field. The "info" tool on the left hand side of the interface can be used to interactively query these features. The underlying infrastructure accepts soil data both in SSURGO and PedLogic formats. A newer interface based on the Ka-Map product will provide the flexibility required to include all of the many forms of educational materials that will be part of our final product. Some of these new materials will include:
  • Annotated landscape, vegetation, and soil pit photographs
  • Block diagrams illustrating various geologic, terrian, and environmental factors related to the distribution of soils
  • Depth profiles of soil information from both lab and field sources.
  • Links to several transects which highlight variation as a function of (x)
  • Links to trails and trail markers, for a reference to reality
  • Information related to the collection of soils data in the field
  • Misc. products related to soils and soil forming factors: eroson/deposition, hydrologic modeling...
Links:
Ka-Map Interface
10 random pedons from the PINN database

Sample images returned from click on soil pit location: Auto-generated from soil attributes, hover mouse over a horizon for more information on that horizon.


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Tooltips via wz_tooltip.js library
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Restored 1933 Geologic Map of Pinnacles

Submitted by dylan on Sat, 2006-03-18 20:51.
1933 PINN geology map preview
Sample
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Visual Comparison of 2 Raster Images

Submitted by dylan on Fri, 2006-03-17 22:47.

Terrain Classification Ideas: Coupling GRASS and R

Submitted by dylan on Fri, 2006-03-17 20:13.
Terrain Classification: Example 1
Fig. 1
Terrain Classification: Example 2
Fig. 2
Terrain Classification: Example 3
Fig. 3
Terrain Classification: Example 4
Fig. 4
Terrain Classification: Example 5
Fig. 5

Initial classification of terrain based on 9 topographic parameters extracted from a 10 meter DEM. Slope, profile curvature, maximum curvature, minimum curvature, longitudinal curvature, and cross-sectional curvature were computed from a 15x15 moving window by r.param.scale. A 9x9 moving window was used to compute the hypsometric integral as defined by Wood and Snell (1960). These 7 parameters were extracted from a given region, and classified with the clara() function from the cluster package in R. Transferal of raster data between GRASS and R was made possible by the spgrass6 package. An excellent overview of some of the features in the spgrass6 package is included in the third volume of the GRASS newsletter. Some initial results are displayed in Figures 1 and 2. Terrain data is better visualized in 3 dimensions: Figure 3 contains a view of both Temblor and Volcanic lanforms near McCabe Canyon. Ideas for this type of classification technique came from Roger Bivand (Bivand, 2000).

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Computing terrain-specific slope classes by region

Submitted by dylan on Sun, 2006-02-26 21:46.

 

Background

Four regions were selected within the PINN boundary for analysis of intrinsic slope classes, based on terrain type.Figure 1 illustrates the four regions that were choosen. Figure 2 shows histograms of each region along with intrinsic slope class breaks (red) and NRCS slope class breaks (gray). Note that NRCS slope classes were derived from a similar analysis (k-means clustering) of slope values from the entire park: e.g. without regard for specific landform. See attached PDF version of Figure 2 at the bottom of this page.

Sample location density: visualization examples

Submitted by dylan on Fri, 2006-02-03 03:37.

Depicting the relative density of sampling can be an interesting task, especially when the points are highly clustered and sparse. Three simple operations that can reveal subtle patterns in the spatial distribution of sample points were explored:

  • A voronoi tessellation vector operation performed on the actual sample locations.
  • A pseudo-density raster operation based on a count of cells, within proximity to sample points, and within a given radius.
  • A kernel-smoothed density function, based on a given standard deviation of spatial density.
  • A density estimation performed by the density() function from the Spatstat package in R
Sample Location Density - Voronoi
Voronoi tessellation
Sample Location Density - v.neighbors function
Psudo-density calculation
Sample Location Density - v.kernel function detail
Kernel-smoothed density

Spatial density estimation in RSpatial density estimation in R

Converting GRASS vectors from 2D into 3D: v.drape

Submitted by dylan on Wed, 2005-09-28 23:12.

More often than not geographic data come in a format that is essentially two-dimensional: i.e. raster grids and vector points, lines, and areas with only (x,y) style coordinates.

GRASS and POVRAY

Submitted by dylan on Mon, 2005-08-22 22:23.
Adding GRASS vectors to POVRAY Scenes: v.out.pov
GRASS Vectors
povray clipped ssurgo data
SSURGO cutaway
povray slope class cutaway image
Slope class cutaway
PINN Topo-map with POVRAY
Topomap
McCabe Canyon and Temblor Formation
Panchromatic
View of Mt. Defiance from Bear Valley
Near infrared
Over PINN: Geomorphic Features
Geomorphic features.
View of Mt. Defiance from Bear Valley. 2 meter true color
View of Mt. Defiance from Bear Valley, Pinnacles National Monument. Pan Chromatic 2m res.

Thanks to Markus Neteler for initial insight on how to build an appropriate POVRAY script file.